Objective To explore key genes and mechanisms of depression aggravating Crohn disease. Methods In March 2023, the Public Health Genomics and Precision Health Knowledge Base and Gene Expression Omnibus database were used to identify the overlapping differentially expressed genes between Crohn disease and depression and the key genes were screened by Metascape, STRING, Cytoscape, and protein interaction network analysis. The Gene Expression Omnibus database was used to analyze the correlations between key genes and clinical pathologies such as Crohn Disease Endoscopic Index of Severity and intestinal microvilli length. Results There were 137 overlapping differentially expressed genes between Crohn disease and depression, and 25 key genes were further screened out. Among them, CREB1, FKBP5, MAPT, NTSR1, OXTR, PROK2, POMC, HTR2B, and PPARGC1A genes were significantly correlated with multiple clinical parameters. The functions of PROK2 and PROK2-related genes were mainly enriched in neutrophil and granulocyte migration, neutrophil and granulocyte chemotaxis, etc. Conclusions There are 25 key genes, especially CREB1, FKBP5, MAPT, NTSR1, OXTR, PROK2, POMC, HTR2B, and PPARGC1A, that possibly contribute to the establishment and deterioration of Crohn disease caused by depressive disorder. Among these genes, PROK2 showes the possibility of regulating immune cell (neutrophils and CD8+ T cells) infiltration.
Nonrandomized studies are an important method for evaluating the effects of exposures (including environmental, occupational, and behavioral exposures) on human health. Risk of bias in nonrandomized studies of exposures (ROBINS-E) is used to evaluate the risk of bias in natural or occupational exposure observational studies. This paper introduces the main contents of ROBINS-E 2022, including backgrounds, seven domains, signal questions and the operation process.
Objective For potential patients with better prognosis of non-small-cell lung cancer (NSCLC) with epidermal growth factor receptor (EGFR) mutations, a simpler and more effective model with easy-to-obtain histopathological parameters was established. MethodsThe computed tomography (CT) images of 158 patients with EGFR-mutant NSCLC who were first diagnosed in West China Hospital of Sichuan University were retrospectively analyzed, and the target areas of the lesions were described. Patients were randomly assigned to either a model training group or a test group.The radiomics features were extracted from the CT images, and the least absolute shrinkage and selection operator (LASSO) regression method was used to screen out the valuable radiomics features. The logistic regression method was used to establish a radiomic model, and the nomogram was used to evaluate the discrimination ability. Finally, the calibration curve, receiver characteristic curve (ROC), Kaplan-Meier curve and decision curve analysis (DCA) were employed to assess model efficacy. ResultsA nomogram combining three important clinical factors : gender, lesion location, treatment, and imaging risk score was established to predict the 3-year, 5-year, and 8-year survival rates of NSCLC patients with EGFR mutation. The calibration curve demonstrated highly consistent between model-predicted survival probabilities and observed overall survival (OS). The area under the curve (AUC) -ROC of the predicted 3-year, 5-year and 8-year OS was 0.70, 0.79 and 0.68, respectively. The Kaplan-Meier curve revealed significant OS disparities when comparing high- and low-risk patient subgroups. The DCA curve showed that the predicted 3-year and 5-year OS increased more clinical benefits than the treatment of all patients or no treatment.ConclusionThe nomogram for predicting the survival prognosis of NSCLC patients with EGFR mutation was constructed and verified, which can effectively predict the survival time range of NSCLC patients, and provide a reference for more individualized treatment decisions for such patients in clinical practice.